MmuEX1007961 @ mm10
Exon Skipping
Gene
ENSMUSG00000048440 | Cyp4f16
Description
cytochrome P450, family 4, subfamily f, polypeptide 16 [Source:MGI Symbol;Acc:MGI:1917351]
Coordinates
chr17:32542738-32545153:+
Coord C1 exon
chr17:32542738-32542791
Coord A exon
chr17:32542877-32543004
Coord C2 exon
chr17:32544883-32545153
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGACATTACTGCCCTCCCAGGGG
3' ss Score
6.12
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
CTTTGGTGGCCCCAAAGGACATGACATTTTTACGCTTCCTGAAGCCCTGGCTGG
Seq A exon
GGGATGGGCTCTTCCTGAGTTCAGGTGACAAGTGGAGCCGCCATCGTCGACTGCTGACACCTGCCTTCCACTTTGATATCCTGAAGCCCTATGTGAAGATTTTTAACCAGAGTGTGAACATCATGCAC
Seq C2 exon
GTCTCCCAGTGAATACATTTCTGCCATCTTGGAACTCAGTTCCCTCATAATAAAAAGGTCACTTCAGCTCTTCTTGTTCGTTGACTTCCTGTATTACCACACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGTGACCTGGTGCACAACTTCACAGATGCTGTCATTAGGGAGAGACGGCACACTCTCTCCAGCCAAAACCATGATGAGTTCTTGAAGTCCAAGACTAAGTCTAAGACTCTGGATTTCATTGATGTTCTCTTGTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048440_MULTIEX1-4/5=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
PF0006717=p450=FE(13.1=100)
C2:
PF0006717=p450=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCAAAGGACATGACATT
R:
TTTTGGCTGGAGAGAGTGTGC
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types