HsaEX6093628 @ hg19
Exon Skipping
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450, family 4, subfamily F, polypeptide 8 [Source:HGNC Symbol;Acc:2648]
Coordinates
chr19:15730301-15730572:+
Coord C1 exon
chr19:15730301-15730354
Coord A exon
chr19:15730446-15730498
Coord C2 exon
chr19:15730501-15730572
Length
53 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGGCTGCCGTACTAGGGG
3' ss Score
5.07
5' ss Seq
TTGTGACGC
5' ss Score
-9.35
Exon sequences
Seq C1 exon
ATGCCATTACAGACAAGGACATAGTCTTCTACAAGACCCTGAAGCCCTGGCTGG
Seq A exon
GGGATGGGCTCTTGTTAAGTGTTGGTGACAAGTGGAGACACCACCGTCGCTTG
Seq C2 exon
ACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATATAAAGATTTTCAGCAAGAGTGCAAACATCATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTACAGACAAGGACAT
R:
TGCATGATGTTTGCACTCTTG
Band lengths:
124-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)