MmuEX1008039 @ mm10
Exon Skipping
Gene
ENSMUSG00000033883 | D3Ertd254e
Description
DNA segment, Chr 3, ERATO Doi 254, expressed [Source:MGI Symbol;Acc:MGI:1098769]
Coordinates
chr3:36151017-36162727:+
Coord C1 exon
chr3:36151017-36151195
Coord A exon
chr3:36159522-36159648
Coord C2 exon
chr3:36162632-36162727
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTATGTATTTTTATTTCAGGAA
3' ss Score
7.99
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TAGAGGGGGCGGGCCTTCATGCTGTGTTTCTGAAGTCCAGGATCTTGGAATCCTCCTCAGGCTGGGTCTCTTCCGGTGTAGACTGTAGCTCAGCCCTGCGGCATCCGTTTGCCCTGCGTCTGTAGGGTGCCGGGCCATCCACCGGGAGGACGCGGACTCCGCGTAGTCAAGCCACAATG
Seq A exon
GAACAGTTGACCTTCAGGGATGTGGCCATTGATTTTTCTGGAGAGGAATGGGAGTGTCTGGATTCTGAGCAGCAGAATTTGTATACAGATGTGATGTTGGAAAACTATAGGAACCTCGTTTTCCTGG
Seq C2 exon
GTCTTGCTGTGTCTAAGCCATACCTGGTTACCTGTCTGGAGCAAAGGAAAGAGCCCTGGAATGTAAAGACGCAAAAGACCATGGCCGTGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033883-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTTCATGCTGTGTTTCT
R:
TGCGTCTTTACATTCCAGGGC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types