Special

MmuEX1008236 @ mm10

Exon Skipping

Gene
Description
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2679003]
Coordinates
chr7:119859380-119895745:-
Coord C1 exon
chr7:119895558-119895745
Coord A exon
chr7:119895071-119895146
Coord C2 exon
chr7:119859380-119859915
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTAATCGTTAACAGCTC
3' ss Score
7.44
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGGCTTCGGGGCGGCCGCCGCCGGTGGGCTGCAGATGAGGAGGAGGCGGCGGCCGCGGTGGCAGAAAAGGCGGCGGCGGCGGGGGTAGGGAGCCTGGAAACGCAAGCGGGGATGGTAGGTAGTTTGGACCCGCCGGGCCGCCGTCGTTTCCAGAAAGGGTTTGACTGGAGGAACCTCTGGAGCAGCT
Seq A exon
CTCTGGAATTAAGGGGCTCAGACCTGAAGGCCTTTCAGTGCACCTTTGCTATAAACGATAACCATCTGTGCCTGAG
Seq C2 exon
GTTGCCTGGCTCCTCTAACTGATGGCATGTTGAAGTACATGGGCCAGTGGCAGCGAGGGCATTTGATCCAGAGGGGTCCACTCTAGAGGCCAGGGTACTACCACCATGGGCCAGTGTGTCACCAAGTGCAAGAATCCTTCATCAACCTTGGGCAGCAAGAATGGAGACCGGGACCCCAGCAACAAGTCACACAGCAGGCGGGGGGCTAGCCACCGTGAGGAACAGGTGCCACCTTGTGGCAAACCAGCTGGGGATATTCTTGTCAATGGGACCAAGAAAGCAGAGGCTGCCACTGAGGCCTGCCAGCTGCCAACTTCTTCTGGAGATGCTGGGAGGGAGTCCAAGACCAATGCTGAGGAGTCTTCTTTGCAGAGGTTGGAAGAACTATTCAGGCGCTACAAGGATGAGCGGGAGGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGACCTATGTGTTGATCCTACAGAATTTCGAGTGCTGCTCTTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048787_MULTIEX1-3/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.501
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGGGGATGGTAGGTAGT
R:
GTACCCTGGCCTCTAGAGTGG
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types