MmuEX1008236 @ mm10
Exon Skipping
Gene
ENSMUSG00000048787 | Dcun1d3
Description
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2679003]
Coordinates
chr7:119859380-119895745:-
Coord C1 exon
chr7:119895558-119895745
Coord A exon
chr7:119895071-119895146
Coord C2 exon
chr7:119859380-119859915
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTAATCGTTAACAGCTC
3' ss Score
7.44
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGGCTTCGGGGCGGCCGCCGCCGGTGGGCTGCAGATGAGGAGGAGGCGGCGGCCGCGGTGGCAGAAAAGGCGGCGGCGGCGGGGGTAGGGAGCCTGGAAACGCAAGCGGGGATGGTAGGTAGTTTGGACCCGCCGGGCCGCCGTCGTTTCCAGAAAGGGTTTGACTGGAGGAACCTCTGGAGCAGCT
Seq A exon
CTCTGGAATTAAGGGGCTCAGACCTGAAGGCCTTTCAGTGCACCTTTGCTATAAACGATAACCATCTGTGCCTGAG
Seq C2 exon
GTTGCCTGGCTCCTCTAACTGATGGCATGTTGAAGTACATGGGCCAGTGGCAGCGAGGGCATTTGATCCAGAGGGGTCCACTCTAGAGGCCAGGGTACTACCACCATGGGCCAGTGTGTCACCAAGTGCAAGAATCCTTCATCAACCTTGGGCAGCAAGAATGGAGACCGGGACCCCAGCAACAAGTCACACAGCAGGCGGGGGGCTAGCCACCGTGAGGAACAGGTGCCACCTTGTGGCAAACCAGCTGGGGATATTCTTGTCAATGGGACCAAGAAAGCAGAGGCTGCCACTGAGGCCTGCCAGCTGCCAACTTCTTCTGGAGATGCTGGGAGGGAGTCCAAGACCAATGCTGAGGAGTCTTCTTTGCAGAGGTTGGAAGAACTATTCAGGCGCTACAAGGATGAGCGGGAGGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGACCTATGTGTTGATCCTACAGAATTTCGAGTGCTGCTCTTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048787_MULTIEX1-3/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.501
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGGGGATGGTAGGTAGT
R:
GTACCCTGGCCTCTAGAGTGG
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types