MmuEX1008237 @ mm10
Exon Skipping
Gene
ENSMUSG00000048787 | Dcun1d3
Description
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2679003]
Coordinates
chr7:119859380-119895745:-
Coord C1 exon
chr7:119895558-119895745
Coord A exon
chr7:119870415-119870544
Coord C2 exon
chr7:119859380-119859915
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATATTTTAATTTTTTTGTAGGCA
3' ss Score
7.96
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGGGCTTCGGGGCGGCCGCCGCCGGTGGGCTGCAGATGAGGAGGAGGCGGCGGCCGCGGTGGCAGAAAAGGCGGCGGCGGCGGGGGTAGGGAGCCTGGAAACGCAAGCGGGGATGGTAGGTAGTTTGGACCCGCCGGGCCGCCGTCGTTTCCAGAAAGGGTTTGACTGGAGGAACCTCTGGAGCAGCT
Seq A exon
GCATTTAAGGTGGTAGCTCAGCCAAGTAACGTCCTTCCATGCAAGCTTGGAGACCTGAGTTCAGAAACCTCAGAACCCATGTTTAAAAAACAAAAATCAAAGAGTAGGGCTGTCAAGATGGCTCAGCAAG
Seq C2 exon
GTTGCCTGGCTCCTCTAACTGATGGCATGTTGAAGTACATGGGCCAGTGGCAGCGAGGGCATTTGATCCAGAGGGGTCCACTCTAGAGGCCAGGGTACTACCACCATGGGCCAGTGTGTCACCAAGTGCAAGAATCCTTCATCAACCTTGGGCAGCAAGAATGGAGACCGGGACCCCAGCAACAAGTCACACAGCAGGCGGGGGGCTAGCCACCGTGAGGAACAGGTGCCACCTTGTGGCAAACCAGCTGGGGATATTCTTGTCAATGGGACCAAGAAAGCAGAGGCTGCCACTGAGGCCTGCCAGCTGCCAACTTCTTCTGGAGATGCTGGGAGGGAGTCCAAGACCAATGCTGAGGAGTCTTCTTTGCAGAGGTTGGAAGAACTATTCAGGCGCTACAAGGATGAGCGGGAGGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGACCTATGTGTTGATCCTACAGAATTTCGAGTGCTGCTCTTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048787_MULTIEX1-4/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.501
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGGGGATGGTAGGTAGT
R:
GTCTCCATTCTTGCTGCCCAA
Band lengths:
253-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types