MmuEX1008334 @ mm10
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:139090454-139102093:+
Coord C1 exon
chr1:139090454-139090555
Coord A exon
chr1:139092555-139092707
Coord C2 exon
chr1:139101968-139102093
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTCATTTTCATGTTTTTCAGGAC
3' ss Score
10.61
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
AGAGTGAAAAATAAATCATTGGAAGATGTGGTTGTGTTAAATGTTGACACAAACACGTTAGAATCACCATTTAATGACTTGAGCAGCCTGCCCAGTGATGTG
Seq A exon
GACTGCCCTTTTAGAGCTCTGGGGGATACACAATAAAGCATTGCAACACAGTTTAAAATGGCAAATGTTTTAAGTCAGATCTGATAAACTCCTGAATGATAACTCAGTTTTTATGTGTGATCTACATTAATAAATAGTTTTGAAGCCTGAAAG
Seq C2 exon
GTCTCGGCCTTGAAAAATAAGCTGAAGAAGCAGTCCACAGCTACGGGAGATGGAGTGGCTCGGGCCTTTCTGAGGGCTCAGGCGGCTTTGTTTGGCTCCTACCGAGATGCTCTGAGATACAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268_MULTIEX1-14/15=13-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(9.4=50.0)
A:
NO
C2:
PF0345514=dDENN=PU(40.3=64.3)
Main Inclusion Isoform:
ENSMUST00000168527fB8666
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAATCATTGGAAGATGTGGTTGT
R:
GGCTTGTATCTCAGAGCATCTCG
Band lengths:
218-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types