MmuEX1008581 @ mm10
Exon Skipping
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:131103543-131106476:+
Coord C1 exon
chr7:131103543-131103742
Coord A exon
chr7:131104849-131104875
Coord C2 exon
chr7:131106153-131106476
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATGGATTCTTTTTCTCACAGGTC
3' ss Score
8.92
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTTGAAGGAGGCTGCAGCTTTGACTATATCCTGGTTTACGATGGCCCTGAATATAATTCTTCTCTCATTGCTCCGGTGTGTGATGGGTTCAATGGATCTTTCACCTCAACCGGAAACTTCATGTCCGTAGTCTTCATCACGGATGGCAGTGTGACAAGGAGAGGGTTTCAGGCTTACTACTACTCCACAGTCAGCACAA
Seq A exon
GTCCTCCATCATTCCCAAACATAACTG
Seq C2 exon
GAAATGATTCTTCATTGGCGCTGAGGCTGGTAAATGGATCAAACCGGTGTGAGGGCCGAGTGGAGATCTTGTACAGAGGCTCTTGGGGCACCGTGTGTGATGACAGCTGGGGCATCAGTGACGCCAATGTGGTCTGCAGACAGCTCGGTTGTGGCTCTGCTCTGTCTGCACCAGGAAATGCTTGGTTCGGTCAGGGCTCAGGGCTCATTGTCCTGGATGATGTGTCTTGCTCGGGGTATGAGTCTCACCTGTGGAACTGTCATCATCCTGGCTGGCTTGTCCATAACTGTCGCCATTCTGAGGATGCAGGAGTCATCTGTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-'46-46,'46-45,47-46
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(56.1=88.2)
A:
NO
C2:
PF0053013=SRCR=WD(100=89.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGAGAGGGTTTCAGGCT
R:
TACAAGATCTCCACTCGGCCC
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types