RnoEX0001376 @ rn6
Exon Skipping
Gene
ENSRNOG00000020560 | AABR07005821.1
Description
NA
Coordinates
chr1:201672528-201675826:+
Coord C1 exon
chr1:201672528-201672736
Coord A exon
chr1:201673860-201673889
Coord C2 exon
chr1:201675503-201675826
Length
30 bp
Sequences
Splice sites
3' ss Seq
ATGGCTTCTTTTTCTCACAGCTC
3' ss Score
8.99
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTTGAAGGAGGTTGCAACTATGACTACATCCTGGTTTTTGATGGCCCTGAATACAATTCTTCTCTCATTGCTCGGGTTTGTGATGGGTCCAATGGATCTTTCACCTCAACCCAGAACTTCATGTCTGTAGTCTTTATCACGGATGGCAGTGTCACGAGGAGAGGGTTCCAAGCTGACTACTACTCCACTCCTATCAGCACCAGCACAA
Seq A exon
CTCCTCCAACGACGTTCCCGATCATTACTG
Seq C2 exon
GAAATGATTCTTCATTGGTGTTGAGACTGGTAAATGGAACAAACCGCTGTGAGGGCCGAGTGGAGATCTTGTACAGAGGCTCTTGGGGTACCGTGTGCGACAACAGCTGGGACATCAATGATGCCAATGTGGTCTGCAGACAGCTCGGTTGTGGCTCTGCTCTGTCTGCTCCAGGAAATGCTTGGTTTGGTCAGGGCTCAGGGCTCATTGTCCTGGATGATGTGTCTTGCTCTGGGTATGAGTCTCATCTGTGGAATTGTCGTCACCCTGGCTGGCTTGTCCATAATTGTCGCCATGTTGAGGATGCAGGAGTCATCTGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020560-'39-41,'39-40,40-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.1=84.5)
A:
NO
C2:
PF0053013=SRCR=WD(100=89.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCACGAGGAGAGGGTTC
R:
CCTCACAGCGGTTTGTTCCAT
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]