MmuEX1008657 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181708991-181718868:+
Coord C1 exon
chr1:181708991-181709119
Coord A exon
chr1:181716183-181716320
Coord C2 exon
chr1:181718768-181718868
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTTAAAACTCTCCCCACAGAGT
3' ss Score
9.39
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
ATTGTCGTATTTATTGATGACTTGAATATGCCGATAGTAGACGCATGTGGAACACAGCCACCCCTGGAGTTGATCAGACAGTTATTAGATATGGGAGGTGTTTATGACACTGAAAGGAACATGTGGAAG
Seq A exon
AGTATTCAGGATCTCTCTCTAATCGCTGCTTATACCTCTTCTGTCAGTGGGAAGGAGATCAGCCCCCGTCTCCTCAAACACTTCTCCACGCTGGTGTTGCCTCATCCTCCACAGAGTGCCCTATGTACGGTATTTCAG
Seq C2 exon
GCTCACTTGGGAATGTATTTCTCCATCAATAACTTCGTGAATGAGGTTCAGAAATGCAGAGATGAGATTGTGCACTGCTCCCTGGCAATATATTATGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'60-62,'60-61,61-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.3=100)
A:
PF127752=AAA_7=FE(19.7=100)
C2:
PF127752=AAA_7=FE(22.4=100)
Main Inclusion Isoform:
ENSMUST00000208001fB8901
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGATGACTTGAATATGCCGATAGT
R:
ACTTCATAATATATTGCCAGGGAGCA
Band lengths:
218-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types