MmuEX1008662 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181581919-181590583:+
Coord C1 exon
chr1:181581919-181582029
Coord A exon
chr1:181584974-181585095
Coord C2 exon
chr1:181590440-181590583
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTTGTCATCTTAGACG
3' ss Score
6.93
5' ss Seq
CAGGCACAG
5' ss Score
0.93
Exon sequences
Seq C1 exon
AGTCCGTCACTTCACAGTCTCACACGGAAACCAGATGGAGACATTTATACCCATCGACCTGACAGTTCAGAAGCCGAATGTGAACAGAAAGGATCACAAGTCAAGAAGAAG
Seq A exon
ACGTTCAATACATAAAGGCCGACAGTGCATACATGGCAGATCAGCTATGGCTGTGGGGAAGAAAATACCCTCCGAGTCCTCAAGTTCAGAGGGGACGGAAGATGACCAAGATTACCGTCCAG
Seq C2 exon
GTTATCTTGAACAAAAGTTCAGTCCACAATGTGTAGGGGTTTCAAAACCATTTTTCCCCGATATAAGGAATGCAAAAGTGAAGCCGGAGCAGACTGCCCATACAACCAGGAAGAGGTCCCGAATTCAGCCGTATGACAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=1.000 C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCGTCACTTCACAGTCTCA
R:
CATACGGCTGAATTCGGGACC
Band lengths:
246-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types