RnoEX0001841 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:99889545-99895374:+
Coord C1 exon
chr13:99889545-99889645
Coord A exon
chr13:99892956-99893077
Coord C2 exon
chr13:99895274-99895374
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCTTGTCACCTTAGACA
3' ss Score
8.52
5' ss Seq
CAGGCATGG
5' ss Score
2.23
Exon sequences
Seq C1 exon
TTCAGAGTCTCACACGGAAACTAGATGGAGTCGTTTATACCCGTTGACCTGCCAGTTCAGAAGCCAGATGTGAACGAGAAGGAACGCAACTCAAGAAGAAG
Seq A exon
ACATTTACTATATAAAGACCGTTGGAAAGATTGCGGCTCATCTCAGAACAGACTAGCTAAGGCGAAGACATCCTCCGAGTCCCTGATATCAGAAGGAGCAGATGACCAAGATTACTACCCAG
Seq C2 exon
ATTACCTTGAACAAAAGTTCAGTCGGCAATGCGTAGTGGGTTCAAAACCGTTTCTCCCTGATATAAAGAAGGCAAAAGAAAAGCCGGAGAAGACCGCCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGTCTCACACGGAAACT
R:
CGGTCTTCTCCGGCTTTTCTT
Band lengths:
196-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]