MmuEX1008716 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66060969-66072102:-
Coord C1 exon
chr11:66071942-66072102
Coord A exon
chr11:66062625-66062679
Coord C2 exon
chr11:66060969-66061125
Length
55 bp
Sequences
Splice sites
3' ss Seq
CCCCTTATTTTTGTGACAAGGTC
3' ss Score
6.17
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTGACAATGCCCAGGCTTTCCTCTGGCTGTCACAGCTACGACATCGTTGGGATGATGAGGCCAAGCACTGCTTTGCTAACATCTGTGACGCCCAGTTTCTATATTCCTATGAGTACTTGGGAAATACACCTCGCCTAGTGATCACGCCTCTGACTGATAG
Seq A exon
GTCTCTCTTACTGAATGAACCTGAAGCACACCATTTCAGCCACACTGGCTGTCCA
Seq C2 exon
GTGCTACATCACTCTCACCCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCAGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCAGAGCACTCGGCATCATGGTCTATGTGTTTAACTGTTCTGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'29-34,'29-33,30-34
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.218
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(40.4=35.2)
A:
PF127742=AAA_6=FE(38.3=100)
C2:
PF127742=AAA_6=PD(17.0=18.2)
Main Inclusion Isoform:
ENSMUST00000080665fB8929
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCACGCCTCTGACTGA
R:
TAGACCATGATGCCGAGTGCT
Band lengths:
147-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types