MmuEX6086213 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66060969-66072980:-
Coord C1 exon
chr11:66072741-66072980
Coord A exon
chr11:66071942-66072102
Coord C2 exon
chr11:66060969-66061125
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCATTCCTCTCTTAGGTT
3' ss Score
10.66
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
Exon sequences
Seq C1 exon
GTGGCTCTGACCTGCACTCAGATCTGGTGGACGACAGAGGTGGGCATTGCATTTGCCAGGCTGGAGGAAGGCTATGAGAGTGCCATGAAGGACTACTATAAGAAGCAAGTGGCCCAACTCAAAACCCTTATCACCATGCTAATTGGGCCGCTCTCCAAGGGGGACAGGCAAAAGATCATGACCATATGCACCATCGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAAAAG
Seq A exon
GTTGACAATGCCCAGGCTTTCCTCTGGCTGTCACAGCTACGACATCGTTGGGATGATGAGGCCAAGCACTGCTTTGCTAACATCTGTGACGCCCAGTTTCTATATTCCTATGAGTACTTGGGAAATACACCTCGCCTAGTGATCACGCCTCTGACTGATAG
Seq C2 exon
GTGCTACATCACTCTCACCCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCAGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCAGAGCACTCGGCATCATGGTCTATGTGTTTAACTGTTCTGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'28-34,'28-32,29-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(40.4=35.2)
C2:
PF127742=AAA_6=PD(17.0=18.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCCAACTCAAAACCCTT
R:
TAGACCATGATGCCGAGTGCT
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types