GgaEX6015779 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1049241-1052061:+
Coord C1 exon
chr18:1049241-1049480
Coord A exon
chr18:1050658-1050818
Coord C2 exon
chr18:1051896-1052061
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGCACATGGATGCATTGCAGGTG
3' ss Score
6.9
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGGCTCTGTGCTGCACCCAGATTTGGTGGACGACTGAGGTTGGGATTGCCTTCGCCAGGGTGGAGGAAGGCTACGAGAATGCCATGAAGGAATATCACAAGAAGCAAGTGACCCAGCTGAACACCCTCGTTACCATGCTAATTGGGCAGCTCTCCAAGGGTGACAGGCAGAAAATCATGACGATATGCACCATTGATGTGCACGCTCGGGATGTGGTAGCAAAGATGATAGCACAGAAG
Seq A exon
GTGGACAACGCGCAGGCGTTCGTTTGGCTGTCGCAGCTCCGACACAGGTGGTCAGATGAGGAGCGGCACTGCTTCGCCAACATCTGCGATGCCCAGTTCCTCTACTCCTATGAGTATCTTGGCAATACCCCTCGGCTTGTGATCACTCCACTGACAGACAG
Seq C2 exon
CTGTGGAAGATGTTACATCACCCTGACCCAGTCTCTGCATCTGACCATGAGCGGAGCACCTGCGGGCCCTGCAGGCACCGGCAAGACGGAGACTACGAAAGACTTGGGGCGAGCCCTGGGCATCATGGTGTATGTGTTTAACTGCTCTGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'29-30,'29-29,31-30=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.1=35.2)
C2:
PF127742=AAA_6=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAGTGACCCAGCTGAAC
R:
CGCCCCAAGTCTTTCGTAGTC
Band lengths:
249-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]