GgaEX6015779 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1066956-1069776:+
Coord C1 exon
chr18:1066956-1067195
Coord A exon
chr18:1068373-1068533
Coord C2 exon
chr18:1069620-1069776
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGCACATGGATGCATTGCAGGTG
3' ss Score
6.9
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGGCTCTGTGCTGCACCCAGATTTGGTGGACGACTGAGGTTGGGATTGCCTTCGCCAGGGTGGAGGAAGGCTACGAGAATGCCATGAAGGAATATCACAAGAAGCAAGTGACCCAGCTGAACACCCTCGTTACCATGCTAATTGGGCAGCTCTCCAAGGGTGACAGGCAGAAAATCATGACGATATGCACCATTGATGTGCACGCTCGGGATGTGGTAGCAAAGATGATAGCACAGAAG
Seq A exon
GTGGACAACGCGCAGGCGTTCGTTTGGCTGTCGCAGCTCCGACACAGGTGGTCAGATGAGGAGCGGCACTGCTTCGCCAACATCTGCGATGCCCAGTTCCTCTACTCCTATGAGTATCTTGGCAATACCCCTCGGCTTGTGATCACTCCACTGACAGACAG
Seq C2 exon
ATGTTACATCACCCTGACCCAGTCTCTGCATCTGACCATGAGCGGAGCACCTGCGGGCCCTGCAGGCACCGGCAAGACGGAGACTACGAAAGACTTGGGGCGAGCCCTGGGCATCATGGTGTATGTGTTTAACTGCTCTGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=35.2)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGCAAGTGACCCAGC
R:
CGCCCCAAGTCTTTCGTAGTC
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]