MmuEX6086213 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65874471-65886482:-
Coord C1 exon
chr11:65886243-65886482
Coord A exon
chr11:65885444-65885604
Coord C2 exon
chr11:65874471-65874627
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCATTCCTCTCTTAGGTT
3' ss Score
10.66
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
Exon sequences
Seq C1 exon
GTGGCTCTGACCTGCACTCAGATCTGGTGGACGACAGAGGTGGGCATTGCATTTGCCAGGCTGGAGGAAGGCTATGAGAGTGCCATGAAGGACTACTATAAGAAGCAAGTGGCCCAACTCAAAACCCTTATCACCATGCTAATTGGGCCGCTCTCCAAGGGGGACAGGCAAAAGATCATGACCATATGCACCATCGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAAAAG
Seq A exon
GTTGACAATGCCCAGGCTTTCCTCTGGCTGTCACAGCTACGACATCGTTGGGATGATGAGGCCAAGCACTGCTTTGCTAACATCTGTGACGCCCAGTTTCTATATTCCTATGAGTACTTGGGAAATACACCTCGCCTAGTGATCACGCCTCTGACTGATAG
Seq C2 exon
GTGCTACATCACTCTCACCCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCAGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCAGAGCACTCGGCATCATGGTCTATGTGTTTAACTGTTCTGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=35.2)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCCAACTCAAAACCCTT
R:
TAGACCATGATGCCGAGTGCT
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: