HsaEX6021151 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11607520-11622807:+
Coord C1 exon
chr17:11607520-11607759
Coord A exon
chr17:11608342-11608502
Coord C2 exon
chr17:11622651-11622807
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTCTACCACTCTCTCTTTAGGTA
3' ss Score
11.41
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGCCCTGACCTGTACTCAGATCTGGTGGACAACAGAAGTGGGCATGGCATTTGCCAGGCTGGAGGAAGGCTATGAGAGTGCCATGAAGGACTATTATAAGAAGCAAGTGGCCCAGCTCAAAACCCTTATCACCATGCTGATTGGCCAGCTCTCCAAGGGAGACCGGCAGAAGATTATGACTATATGCACCATCGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAGAAG
Seq A exon
GTAGACAATGCCCAGGCTTTCCTCTGGCTGTCTCAGCTGCGCCATCGTTGGGATGACGAGGTCAAACACTGCTTTGCCAACATCTGTGATGCCCAGTTTTTGTATTCCTATGAGTACCTGGGAAACACACCTCGCTTGGTGATCACACCTTTGACTGACAG
Seq C2 exon
GTGCTACATCACCCTCACCCAGTCCCTGCACCTGACCATGAGTGGGGCTCCCGCAGGACCTGCAGGCACAGGCAAGACCGAGACCACCAAGGACCTGGGCCGCGCACTGGGCATCCTGGTCTATGTGTTCAACTGCTCGGAGCAGATGGATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=35.2)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTGGCCAGCTCTCCAAG
R:
GCTCCGAGCAGTTGAACACAT
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)