RnoEX0028643 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52580689-52593803:-
Coord C1 exon
chr10:52593564-52593803
Coord A exon
chr10:52592792-52592952
Coord C2 exon
chr10:52580689-52580845
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATCTGCCACTCCTCCTTTAGGTT
3' ss Score
10.83
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTGGCTCTGACCTGCACTCAGATCTGGTGGACGACAGAGGTGGGCATTGCATTTGCCAGGCTGGAAGAAGGCTATGAGAATGCCATGAAGGACTACTATAAGAAGCAAGTGGCCCAACTCAAAACCCTTATCACCATGCTAATCGGGCAGCTCTCCAAGGGGGACAGGCAGAAGATCATGACCATATGCACTATTGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAAAAG
Seq A exon
GTTGACAATGCCCAGGCTTTCCTCTGGCTGTCACAGCTACGCCATCGTTGGGATGATGAGGCCAAGCACTGCTTTGCTAACATCTGCGATGCCCAGTTTCTATATTCCTATGAGTACCTGGGAAATACCCCTCGCCTGGTGATCACGCCTTTGACTGATAG
Seq C2 exon
GTGCTACATCACTCTCACTCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCCGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCCGAGCACTGGGCATCATGGTCTATGTGTTTAACTGTTCCGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'35-33,'35-31,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(79.2=35.2)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTAATCGGGCAGCTCTC
R:
AGTCCATCTGCTCGGAACAGT
Band lengths:
258-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]