MmuEX1009302 @ mm10
Exon Skipping
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24806214-24813631:-
Coord C1 exon
chr2:24813527-24813631
Coord A exon
chr2:24806908-24807002
Coord C2 exon
chr2:24806214-24806368
Length
95 bp
Sequences
Splice sites
3' ss Seq
TAAATAACTACCAAATCCAGTTG
3' ss Score
1.36
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GATGACGGTGGATGGACACCTATGATCTGGGCCACTGAGTACAAGCACGTGGAGCTGGTGAAGCTGCTGCTGTCTAAGGGCTCTGACATCAACATCCGGGACAAC
Seq A exon
TTGTGAACCGTCACTGGCCATAGCCTTAAGGAAAATGACTCTCCCCAGATGTGATCAACTGTCACTATTTTCTCACATTTCTTCTTCACTTTCAC
Seq C2 exon
GAGGAGAACATTTGTCTGCACTGGGCAGCATTTTCAGGCTGTGTGGACATAGCTGAAATACTTCTGGCTGCCAAGTGTGACCTGCATGCTGTGAATATCCATGGAGACTCACCCCTGCACATCGCAGCCAGGGAGAATCGCTACGACTGTGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(35.1=94.3)
A:
NO
C2:
PF127962=Ank_2=PU(51.1=90.4)
Main Inclusion Isoform:
ENSMUST00000091348fB9321
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGACATCAACATCCGGG
R:
ACAGTCGTAGCGATTCTCCCT
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types