RnoEX0031252 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:1981290-1988854:-
Coord C1 exon
chr3:1988750-1988854
Coord A exon
chr3:1982230-1982325
Coord C2 exon
chr3:1981290-1981444
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAAATTACTACTAAACCCAGTTG
3' ss Score
-0.71
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATGATGGTGGTTGGACACCTATGATCTGGGCCACTGAGTACAAGCACGTGGACCTGGTGAAGCTGCTGCTCTCTAAAGGCTCTGACATCAATATCCGGGACAAT
Seq A exon
TTGTGAACCATCACTGGCCATGCCCTTAAGGAAAGTGACTCTTCCCCAGATGTCATCAACTGCCAATATTTTCTCAGATTTCTTCTTCACTTTCAA
Seq C2 exon
GAGGAGAACATTTGTCTGCACTGGGCAGCATTTTCAGGCTGTGTGGACATAGCTGAAATCCTCCTGGCTGCCAAGTGTGACCTGCATGCTGTGAATATCCACGGAGACTCACCCCTGCACATCGCAGCCAGGGAGAATCGCTACGACTGTGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(35.1=94.3)
A:
NO
C2:
PF127962=Ank_2=PU(51.1=88.5)
Main Inclusion Isoform:
ENSRNOT00000086843fB4706
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTACAAGCACGTGGACC
R:
ATTCACAGCATGCAGGTCACA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]