MmuEX1009751 @ mm10
Exon Skipping
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4191585-4193217:+
Coord C1 exon
chr8:4191585-4191674
Coord A exon
chr8:4192239-4192354
Coord C2 exon
chr8:4193120-4193217
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTCCTACCCACTTGTTGCAGGTC
3' ss Score
8.49
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
GGACTGGAGATTGTGTTCCGAGTAGGCCTTGCCCTGCTGCAAGTGAACCAGACAGAGTTGATGCAACTGGACATGGAGGGCATGTCCCAG
Seq A exon
GTCCCCAAAGCTTGCCTGCAAAGTAAACCCTGAGAGTAAACATTTGGGAGGTTTTCAGTATGTTTTCATCCCAGCTCTCAGCCTGGGGGACACGGGAAGGAGCCAGGCATCTTGAG
Seq C2 exon
TACTTCCAGAGAGTCATCCCCCACCAGTTTGACAGCTGCCCAGACAAGCTGGTCCTCAAGGCTTATCAGGTCAAGTACAACCCTAAAAAGATGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832-'24-20,'24-19,25-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000176149fB9624
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGAGATTGTGTTCCGA
R:
CTTCATCTTTTTAGGGTTGTACTTGA
Band lengths:
186-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types