MmuEX1009752 @ mm10
Exon Skipping
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4206232-4211257:+
Coord C1 exon
chr8:4206232-4206327
Coord A exon
chr8:4206496-4206718
Coord C2 exon
chr8:4210505-4211257
Length
223 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCCGCGCACACCAGGTG
3' ss Score
6.68
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
AGGGAGGAGGGCCGCATCCAGGGCCAGCTGAACCACTCGGATTCATCGCAGTACATCCGGGAGCTGAAGGACCAGATCGAGGAGCTCAAGACTGAG
Seq A exon
GTGCGGTTGCTGAAAGGCCCACCGACATTCGAGGACCCGCTGGCTTTCGATGGGCTCAGCCTAACGCGGCACCTGGATGAGGATTCGCTACCATCTTCTGATGAGGAGCTGCTGGGCGTGGGTGTGGGCGTGGGCGCAGCCCTGCAGGACCCACTCTACCCTCTCTCTCCCCGGGACGCGCGCTTCTTCAGAAGCCTGGATCGGCCAGCCAAGGACAGCGAAG
Seq C2 exon
GAATGGGATCTGGCTCAATGAAAAGTCTCCACTTCCACCACAGTCCAGTCACCCTGTGGGGAGGCCACATCATCTGGGGAGAAGCTGGTGACCGAAGTGATGCTGGCACGAGACTCGTCCAAGGGAGACAGCAATTCGGCCCAGCGGCCCAATTCAGCATCGCTAAGCGGAGCCCGGGATCCTCCCGAGACACCACCCACCCCTGAGCCTCCTGAACTGCCTTCGCAGCCCACAGCTGCACCTTCTGCAGCTGCTAGCAGCAGTGTCCGGCTTAGCAGGTGCTGCACAACGCTCGCCTGAAGGGCCCCCAGGGGCAGCTCGCCAAGGCGAGCGGACTTTGGGCTTCTTGAGGATGCTCCTGCACAGTCTGCAGCAGTCACCTTCGCACTGCCAGAGCCAGGCATTGGTTCTGGCTCCACATCTAGGGATCCCGGGGTGGGGGCCACCGACTCTGGTCCTTCAGATTCGTAGATGGTGCACAGGCCATCAGAGGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=0.700 C2=0.860
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGAACCACTCGGATTC
R:
GAAGGCAGTTCAGGAGGCTCA
Band lengths:
297-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types