MmuEX1009950 @ mm10
Exon Skipping
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25220802-25221413:+
Coord C1 exon
chr2:25220802-25220928
Coord A exon
chr2:25221188-25221204
Coord C2 exon
chr2:25221319-25221413
Length
17 bp
Sequences
Splice sites
3' ss Seq
AAAGGTGTGCACTACCACAGCCT
3' ss Score
1.54
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
CTATACCACTGCAGGAGGGATGAGTACCTGCCTCCACACCCCCCACAGGAGACACTAGATGTAGGCAGATTCCAACGACTGCCCCAGCTAGACCACCCCAACCTAATCCAACGCAAGGCCATCTCAG
Seq A exon
CCTGGCTCAACCTTTAG
Seq C2 exon
GTTATGCCGGCTTCGTCCCCCGGTTTGCCTGGGTAATGGGGATGAATTACCGTGATGGTGTCACACAAGCTATGGATGACTTTGACAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.628 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000028346fB9754
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCAGATTCCAACGACTGC
R:
TCATCCCCATTACCCAGGCAA
Band lengths:
111-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types