RnoEX0034187 @ rn6
Exon Skipping
Gene
ENSRNOG00000010019 | Fam166a
Description
family with sequence similarity 166, member A [Source:RGD Symbol;Acc:1562762]
Coordinates
chr3:2440193-2440837:+
Coord C1 exon
chr3:2440193-2440319
Coord A exon
chr3:2440619-2440635
Coord C2 exon
chr3:2440743-2440837
Length
17 bp
Sequences
Splice sites
3' ss Seq
AAAGGTGTGCACCACCACAGCCT
3' ss Score
1.35
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
CTATACCACTGCAGGAGGGACGAGTACCTGCCTCCACATCCCCCACAGGAGACACTAGATGTGGGCAGATACCAGCGACTGCCCCAGCTAGACCACCCCAACCTAATCCAACGCAAGGCCATCTCAG
Seq A exon
CCTGGCTCAACCTTTAG
Seq C2 exon
GTTATGCTGGCTTTGTTCCCCGGTTTGCCTGGGTAATGGGGATGAATTATCGTGATGGAGTCATACAAGCGATGGATGACTTTGACAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010019-'9-17,'9-16,10-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000013335fB5190
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCCCACAGGAGACACTA
R:
CGGGGAACAAAGCCAGCATAA
Band lengths:
113-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]