MmuEX1010225 @ mm10
Exon Skipping
Gene
ENSMUSG00000030811 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:MGI Symbol;Acc:MGI:3039600]
Coordinates
chr7:127744543-127748450:+
Coord C1 exon
chr7:127744543-127744784
Coord A exon
chr7:127745136-127745332
Coord C2 exon
chr7:127748250-127748450
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCCCGCACTGATTCCCACAGGTG
3' ss Score
8.74
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
GTGCTGGGTAGAGATGGTTGGAAGACTCAGATGAGGACTGAAGAGGGAGGGGTGGGGGTTAAGATGGGGGTAGCCTACTCGTCAATTTTCTTTTCGCAGAAGCTAACTGTCCGGCATGATGGATTCCTGGGCTTCCAAAACGGCTGGGCTGAAAGGGAGCTCGAAAAAATAACTGCAGCCACACGCCCCGTGCCAGAACTGGTTACTTTCTTGAATACTTTTAACGCTAATTCAGCGTGGAG
Seq A exon
GTGACATCAATTCTCCGCCACTGGAGAATGAAAACTTGGGACTACATTTCCCTGCAAGCCCTTTAGAAAAGGAGGCCAAGAGCAAAGAGACTTTCCGTTTCCGTCCGCTAGCAATTTGGCGTGTTCACGGTGATACATATTTCAACAGTAGCGTCCTTTCTCTGTACAACTAAAGCAGAGACTACATAACCCACCAG
Seq C2 exon
CCCTCGGCGTTGCTGACGCCCCCAATGTCGTCGAGCAGCCGGGGACCGGGGGCCGGAGCGCGCCGACGCCGAACCCGCTGCCGTCGTTGCCGGGCCTGTGTGCGAACTGAGTGCGGGGACTGCCATTTCTGCCGAGACATGAAGAAGTTCGGGGGGCCCGGGCGCATGAAGCAGTCGTGCCTGCTTCGGCAGTGCACCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030811_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.163
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0200815=zf-CXXC=WD(100=79.7),PF0013017=C1_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGGGCTTCCAAAACGG
R:
GTCTCGGCAGAAATGGCAGTC
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types