MmuEX1010754 @ mm10
Exon Skipping
Gene
ENSMUSG00000055978 | Fut2
Description
fucosyltransferase 2 [Source:MGI Symbol;Acc:MGI:109374]
Coordinates
chr7:45648591-45666394:-
Coord C1 exon
chr7:45666198-45666394
Coord A exon
chr7:45656827-45657006
Coord C2 exon
chr7:45648591-45651348
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTACTTATTTATTTTAAAGGTA
3' ss Score
9.39
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
Exon sequences
Seq C1 exon
CAGCCTCTCTGGTTCTAGGATGTCAGCAGGTACACCCTGGGTGGAGTTTCTATCCAGGGCTGTGGTTAAACTCAGGAAGTTTCCTTGGTCCTGAACGAAGAGCCAAGCTGGAAGATACACACTGCCGTCCAGTCCGCAGAGCCACGCTGCGGTTCGTCCATTCCTAGGTCATTTCCCTGTTACCACAGCCAGAAGAG
Seq A exon
GTAGGAGTGCTCTGTCTGCATGTACACCTGCAAGCCAGGAGAAAGCATCCTTTACAGATGGTTGAGAGCCACCATGCGGTCGCTGGGATTTGAACTCAGGACCTCTGGAGGAGCAGTCAGTGTTCTTACCCGCTGAGCCAACTCTCCAGCCCAGGATCAATTGCTTGTGCAGTGGCAGAG
Seq C2 exon
CCATGGCGAGTGCCCAGGTACCTTTCTCCTTTCCTCTGGCCCACTTCCTCATCTTTGTCTTTGTGACTTCCACCATCATCCACCTCCAGCAACGAATAGTGAAGCTCCAAACCCTGTCAGAGAAGGAATTACAGGCGGTTCAAATGTCCTCACCAAACGCGGCAAGAACAGACATGCAGCAGAGTGCCAAGCTGCAGGGCATATTCACGATCAATTCCATCGGCCGCCTGGGGAACCAGATGGGCGAATATGCTACATTGTTTGCACTGGCCAGGATGAACGGTCGGCTTGCCTTCATCCCTGAATCCATGCACAACGCTCTAGCGCCCATCTTCAGGATCAGTCTCCCGGTGTTACACAGCGACACAGCCAGAAGGATCCCGTGGCAGAATTACCACCTCAACGACTGGATGGAGGAGCGTTACCGCCACATCCCGGGGCAGTATGTGCGTTTCACGGGATACCCGTGCTCCTGGACCTTCTACCACCACCTGCGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055978_MULTIEX1-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0153111=Glyco_transf_11=WD(100=91.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGTTCGTCCATTCCTAG
R:
TGAATATGCCCTGCAGCTTGG
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types