MmuEX1010899 @ mm10
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:33129847-33130608:-
Coord C1 exon
chr2:33130424-33130608
Coord A exon
chr2:33130114-33130227
Coord C2 exon
chr2:33129847-33129947
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACCTGTGTCCGGCCGGCAGATG
3' ss Score
7.86
5' ss Seq
AAGGTCGGA
5' ss Score
4.85
Exon sequences
Seq C1 exon
GGGCTGCGGCGCGCTAGCTGAGCGTCCGGCCGAACACCGCCGAGGCCCGAGCCCACCCGAGTGTGCCCGAGCCGTCGGCCCCCGCCCGGGGCGATGGAGCAGGAACCCGGCGGGGCTGCCGCTGCGCTCCTGCGGCAGAAGAGGGCGGCGCTGCGGCGCAGGGGGTGCAGCTTTGAGAGTCCCAG
Seq A exon
ATGATGTGGACGTCCGAAGCCTCGGCCCTGTGACAGGCCCTGCACACTACGGCTCAGGGAGGTCTTGGGCTGTGGAGAACGCGACCTGCCTGCTTCTAAATGCTCAAGGACAAG
Seq C2 exon
GTTGTCCGTGCCCCTCCCGGACTTACCTTCCTTAACTGGCGCCCTCCTGAGGAACCAGCCTGGCCGTAGGTGAAGCTTGGCTGCTGCCGGACACGCCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'3-3,'3-2,4-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000124000fB10382
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCTGAGCGTCCGGCC
R:
CAGCAGCCAAGCTTCACCTAC
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types