MmuEX1011470 @ mm10
Exon Skipping
Gene
ENSMUSG00000061469 | Gm12569
Description
predicted gene 12569 [Source:MGI Symbol;Acc:MGI:3650740]
Coordinates
chr11:51226036-51234356:+
Coord C1 exon
chr11:51226036-51226267
Coord A exon
chr11:51233465-51233552
Coord C2 exon
chr11:51234051-51234356
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCATTTCTGAACAGAAA
3' ss Score
8.76
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
ATGGAAAGAAGTGGAGGAGGTGTAGAAAAGCCCAGGTCTCGGAAATCAACAGTTGAGGAACAAGCTCCTTCTGCCGGGGCAGTTGTTGCAGAAACTCCAGAAGGCAAGGTGCCTATACTGTGCAAAGCACTGTCTGCCGCTGTCCTGGTGAAGCATAAAGGGGAAAGCACGAGCAGAGGGATGCACAGCTCCATCCTAGCGGCCCGCAGTCGAACGTGCGTGAAGCAGGGAG
Seq A exon
AAAGAAGCAAGCCAAGGTCAAAGTTTGGGAAGCATCGAAGAATTGAATGTGGGAAGGAGTGAGGAGGAGGCAGAACAAAAGCCCTCAG
Seq C2 exon
GTCATTCCCGTAGCTCATGGACCGACTCTGAAATCAGGATCTTCCTGCAGGAGTGGGAAGTAGTTGAACAGGAAGTGAGCCACACAAGCAACAAGATTCACAAGAAGACCAAGTTTCTTTGTCAGCGCCTCTATCATCGGGGCCTGAAGAAGAGCTGGAAAAGCTGTTTCCACCTACTGCGGAACCTGCATGATCTGCACGAGACTCTCTGTAATGAGAGACCAGGGATTGAACCCTTGTTTTCTCCTTATGCAGAGGCCCTGTACAAGATCCTGGGCTCCAGCCCCCAGGGAAGCCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061469_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCCAGAAGGCAAGGTGC
R:
TTCAGAGTCGGTCCATGAGCT
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types