HsaEX1045044 @ hg38
Exon Skipping
Gene
ENSG00000169131 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
Coordinates
chr5:178695287-178697695:-
Coord C1 exon
chr5:178697586-178697695
Coord A exon
chr5:178696097-178696181
Coord C2 exon
chr5:178695287-178695598
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTTTTTTTTATTAGATA
3' ss Score
8.88
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTCCACTAGAGGAGAGTAAGTGCCAGTGTTCCGCCAACTCAGGAACTGACCAGACCCTGCAGGCACAGTGAGAAGACTCCCGGGAGAAAACTCAGGAGTAAAAATGGAG
Seq A exon
ATAGTAATACTTCCCACTGAAACTACCATAAACATCCAGAAAATGGAGCAGGAAAACACAGCCCAGGGATCAGAAAAGCCCTCAG
Seq C2 exon
TCCAGTCAGTTAAACCTTGGAGTGACCAGGAAATCCGGAGTTTCCTGCAAGAATGGGAATTTCTTGAACGTGAGGTGTACAGGGTGAAGAAGAAGTATCACATAGTATCAAAAGCAATTGCTCAGCGTCTCAAGCAGAGGGGTATCAACAAGAGCTGGAAGGAATGTCTCCAGATGCTAATAAGCTTGCAGGACTTATACTTCACTATTCAGGAGGCCAACCAGAGGCCAAGGTGCCAACCCTTGCCATGTCCTTATGGTGAGGCCCTGCACAGGATTCTGGGGTACAGATGGAAGATCAGCGTCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169131_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGGAGAAAACTCAGGAG
R:
TGCTTGAGACGCTGAGCAATT
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains