RnoEX0048761 @ rn6
Exon Skipping
Gene
ENSRNOG00000022555 | LOC497899
Description
similar to hypothetical protein 4930503F14 [Source:RGD Symbol;Acc:1561674]
Coordinates
chr10:36709727-36711602:-
Coord C1 exon
chr10:36711479-36711602
Coord A exon
chr10:36710535-36710622
Coord C2 exon
chr10:36709727-36710032
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATTGTTCATTTCTGAACAGACA
3' ss Score
6.84
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
AATTACATGATATGAGTGCCTGACTCCTGGGTATAACCCCAGCAACTGGGAGATCAAGACAGGAAGGGCAGAAGTTGATGGTCATCTCTGTCTACAGAGTGGGTTACAGGATAGCCTGGGTTAT
Seq A exon
ACAGAAGCAAACCAAGGCGAAAGTTTGAGAAACACTGAAGGATCCAATGTGGGACGGAGTAGGAAGCGGGCAGGACAAAGGCCCTCAG
Seq C2 exon
GTTCTACTGGAAGCTCATGGACCGACTCTGAAATCAGGGTCTTTCTGCTGGAATGGGAAGTAGTTGAACAGGAAATGGGCCATCCGGGCAGGAAGATCCACAAGAAGACCAGGGCTCTTTGCAGACGCCTCTATCAGCAGGGCCTGAGGAAGAGCTGGGAAAGCTGTTTCGACCTGCTGCTGAGCCTGCGGGATCTACACAGGACGCTCTGTAATGAGAGACCAGGGATTGAACCTTTATTTTCTCCTTATGCAGAAGCTCTGTACAGGATCCTGGGCTCCAGTCCCCAGGGAAGCCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022555-'8-3,'8-1,11-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCCTGACTCCTGGGTAT
R:
CCCATTCCAGCAGAAAGACCC
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]