MmuEX1011619 @ mm10
Exon Skipping
Gene
ENSMUSG00000086578 | Gm13583
Description
predicted gene 13583 [Source:MGI Symbol;Acc:MGI:3650462]
Coordinates
chr2:60550757-60553923:+
Coord C1 exon
chr2:60550757-60550949
Coord A exon
chr2:60551046-60551192
Coord C2 exon
chr2:60552788-60553923
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTGTCCAAACCCTAGTGC
3' ss Score
5.74
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GCAGTGCTCAAGCAGTGAGAAATGGAGCTGTTGCAAAACACGGCCAAGCACATCGTAGCCGTTTCCTGGTTCCTGCGCTTGACTCTATGAACTTAACCTCTGCTGCCAGTTTTATGTCAGCTTGACCCAAACTTGAGTCATTTGTGAAGAGGTCGCCTCAGTTGAGAACATGCACCTATAGAATGGCCCATGG
Seq A exon
TGCTGGTGCTTTAAGAAAGCAGGCCGAGCAAACAATGGAGAGCAATCCAGAAAACACCCTTCTTCCACAGCCTCTGCATCAGCTCCTGTCTTCAGGTTCCTCCTGTCTTTCCCTGACTTCCCTTCACGATGGATTGTAATCTGTGAG
Seq C2 exon
GTCCCGCAAGCCTGGAAGGCAAGACCCTGCCCCTTACCTCGCCCTAATTTGGAGGACAAGAGGATGTGCGGAAGAGACTGTCCCATCTGCCCCGGGACAGTACACAAGCAACCACAATACAAACTAGGCCTTGCTCTTACTTGTCTTGCTCAACTCCTACCCGTTTTCCGCCCCGAGTCCCGGGTGCCAATCAGCCCCCAGTTCGGCGCTGCGGACACTCACCACGCCACTCGAGGGACGGTTCCTGGATGTGAGTCAAATCTTGGGCGATGCCCTGGTGAATCCCCAGCAGCAGCAGCTGTTGCAGCCAGAGCAGCTGCAGCATCGCTAACCATTGCACCATCAGGCACGCTAGGTGACACCCACGGGAATCAGAACCGTGTCCCCTGCTCTGGACTAGGCTGCAGGAGGCAAGAGAAGCTACCACTCTTCTTGAGGACCACGCCATCCCAGAGCCCTGGAGATGAACTCGCCTCCCTTGTCGCCACAGCGTGTACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086578-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACACGGCCAAGCACATC
R:
GACAGTCTCTTCCGCACATCC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types