MmuEX0035533 @ mm10
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60530367-60553308:-
Coord C1 exon
chr2:60553010-60553308
Coord A exon
chr2:60534723-60535103
Coord C2 exon
chr2:60530367-60530540
Length
381 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTATTCTGTTACAGATA
3' ss Score
10.47
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTCTCCACGCCCAGAGTCCCAAGTGTACACGCTGTGGCGACAAGGGAGGCGAGTTCATCTCCAGGGCTCTGGGATGGCGTGGTCCTCAAGAAGAGTGGTAGCTTCTCTTGCCTCCTGCAGCCTAGTCCAGAGCAGGGGACACGGTTCTGATTCCCGTGGGTGTCACCTAGCGTGCCTGATGGTGCAATGGTTAGCGATGCTGCAGCTGCTCTGGCTGCAACAGCTGCTGCTGCTGGGGATTCACCAGGGCATCGCCCAAGATTTGACTCACATCCAGGAACCGTCCCTCGAGTGGCGTG
Seq A exon
ATAAAGGAATTTTCATTATCCAGAGCGAGAGCCTGAAGACATGCATTCAGGCAGGTAAATCTGTACTGACCCTGGAGAACTGCAAGCAGCCAAACGAGCACATGCTGTGGAAATGGGTTTCCGACGACCACCTCTTTAATGTGGGAGGCAGTGGCTGCCTAGGCCTGAACATATCTGCTCTGGAGCAACCATTAAAGCTCTATGAATGTGATTCCACCCTCATTTCCCTGAGATGGCACTGTGACAGGAAGATGATCGAGGGCCCACTCCAGTACAAGGTCCAGGTGAAGTCTGACAACACAGTGGTGGCAAGAAAACAGATCCATAGGTGGATCGCCTACACGTCCAGTGGTGGGGACATTTGTGAGCATCCTAGCAGAG
Seq C2 exon
ATTTATATACGTTAAAAGGGAATGCCCATGGGATGCCTTGCGTGTTTCCTTTCCAGTTCAAAGGTCACTGGCACCATGACTGTATCCGAGAAGGGCAGAAAGAGCACCTGCTGTGGTGTGCCACCACAAGCCGATACGAAGAAGACGAGAAGTGGGGATTCTGCCCAGATCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(1.9=4.9)
A:
PF0065217=Ricin_B_lectin=PD(97.2=82.0)
C2:
PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCATCTCCAGGGCTCT
R:
GGTGCTCTTTCTGCCCTTCTC
Band lengths:
358-739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types