DreEX6090838 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11038043-11051527:+
Coord C1 exon
chr11:11038043-11038390
Coord A exon
chr11:11049894-11050271
Coord C2 exon
chr11:11051354-11051527
Length
378 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTTTGTGTGACCCAGGTA
3' ss Score
7.37
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ATCTGCGCTTCTTCCTGTCAGCGTCCAAATTTGTTCGCGTCGCGGTCAGAACAGACGGGCTGTAAACGGAGAGGGAATATTTTGCCTTTTTACTGCCCCACAGAGAGACCGTGACGTAGAGAATCCAAAAACTTGCGGAAAGTGTGTGGAAAAAACAGGCTGCCGTCTGTGCAGCGCGCTCGTCTCCTGTGGAAATGCGAGGATACAGTAAAACTCTTCAAGTTCGCTTCCATGAAGCGCTTTCTGTCCTTTATGTGCTGCTTTATGTCAGTAATTTCGCTCTTGCTGCTGCGGAAGTGTCGGACAAAACTGAAGTTTGGGACAAAACTCAACTTCTCGAAGTGTACA
Seq A exon
GTAAAGGTGTTTTCCGGTTGGAGAGTGTATCACAGAAGCGTTGTCTCTCAGCTGACTCCTCGGGTCTATCGATGTCCAGCTGTGACCCCTCGTCTCCTGCCCTGCTTTGGAAATGGGTGTCCCGGCACCGACTATACAATCTGGGCACCAGTCGATGCCTAGGGATCAACACGACCAAGCAGCATGACGTTGGCATCTTTGAGTGCGATGTTTCCCTCCCAAGCATGTGGTGGCGCTGTGGGGGTGGCATGTTGTATGGAGCGATGAATAATAAGCTAGTGGCAGTGGACTCAAAAGTGGTGGTGAGAAGAGGTGCTCTGCATCAGTGGAGGATTTTTGGGGCGGCTGGTGAAGGGCCATGTGCTTACCCATATGAAG
Seq C2 exon
ACATTCACACACTTCAAGGAAACTCTCATGGCATGACCTGCTCCATACCCTTCAACTATAACAATAAATGGTTCTGGGACTGTACCTCAGAGGGCAGAGAGGACCGTCACCTCTGGTGTGCCACCACCAACCGCTATGATCAAGATGAGAAATGGGGTTTCTGTCCAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(27.1=55.8)
A:
PF0065217=Ricin_B_lectin=PD(76.7=80.3)
C2:
PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGAGAGACCGTGACGTA
R:
CCTCTCTGCCCTCTGAGGTAC
Band lengths:
353-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]