MmuEX6090437 @ mm10
Exon Skipping
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105292643-105328145:+
Coord C1 exon
chr11:105292643-105292901
Coord A exon
chr11:105325502-105325903
Coord C2 exon
chr11:105327972-105328145
Length
402 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGCCTTTCCTTCCAGAGC
3' ss Score
12.05
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTCTCCGGGAGGCATCACTTCGTCCGGACCCGGAGGAGGATGCGATCCCCTCGCCGGCGGTCATCTGAGCACAGCGCTAGGGCTGTCTCTGCACGCAGCCCTGCCGTGCGCCCTCCGTACTCTCGTCCTCCGAGCGCCGCAGGGATGGTACCCATCCGACCTGCCCTCGCGCCCTGGCCTCGTCACCTGCTGCGCTGCGTCTTGCTTCTCGGGGGACTGCGTCTCGGCCACCCGGCGGACTCCGCCGCCGCCCTCCTGG
Seq A exon
AGCCTGATGTCTTCCTCATCTTCAGCCAGGGGATGCAGGGCTGTCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCACCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGGAACCGACTCTTCAACCTGGGTGCCACACAGTGCCTGGGTACAGGCTGGCCAGTCACCAACACCACAGTTTCCTTGGGCATGTATGAGTGTGACAGAGAGGCCTTGAGTCTTCGATGGCAGTGTCGTACACTAGGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCATTGGAACATCTATGGCAGTGAAGAAGACCTATGTGCTCGACCTTACTATG
Seq C2 exon
AGGTCTACACCATCCAGGGAAACTCACACGGAAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGATGGGCACCTGTGGTGTGCCACCACCCAGGACTACGGCAAAGATGAGCGCTGGGGCTTCTGCCCCATCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-'0-4,'0-1,4-4
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.055 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCATCACTTCGTCCGGA
R:
CCATCTTCTCTGCCAGTGCTG
Band lengths:
357-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types