RnoEX6050075 @ rn6
Exon Skipping
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93520132-93558461:+
Coord C1 exon
chr10:93520132-93520550
Coord A exon
chr10:93555606-93556007
Coord C2 exon
chr10:93558288-93558461
Length
402 bp
Sequences
Splice sites
3' ss Seq
TGTGCTATGTTTCCTTTCAGAAC
3' ss Score
11.34
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
TCCCTGAAGCCGGGTCTCCAGCCTCTCGCCCCCGCGCCCCCGCGCCTCCTCCTTCCCCTCCCACGCTGCCCGCTTCCCTTCCCCTCTGCCCCTCAAACCCTCCTCCAGGGTTCTGCGCTCCTCCCTCTGCCCTCCCTCCGCGGGGCCTGCCTCCTCCCTCCTCTCCGGGAGGCATCACTTCGTCCGGACCCAGAGAAGGATGCGATCCCCTTGTCGGCGGTCATCCCAGCACAGCGTTCGGGCTGTCTCTGCACGCAGCCACGCCGTGCGCGCTGGGTCCTCGCGTCCTCCGAGCGTCGCAGGAATGGGACCCATCCGACCTGCCCTGGCGCCCTGGCCTCGTCACCTGCTGCGCTGCGTCTTACTTCTCGGGGGACTTCGTCTTGGCCACCCGGCAGACTCCGCCGCCGCCCTCCTGG
Seq A exon
AACCCGATGTCTTCCTCATCTTCAGCCAGGGGATGCAGGGCTGCCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCATCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGGAACCGACTCTTCAACCTGGGGGCCATGCAGTGCCTGGGTACCGGCTGGCCTGCCACCAACACCACAGTTTCCCTGGGCATGTATGAATGTGACCGAGAGGCCTTGAGTCTTCGCTGGCAGTGTCGTACACTAGGGGACCAGTTGTCTCTGCTTCTGGGGGCCCGTGCAAACAATGCATCGAAGCCTGGTACCCTGGAGCGCGGCGACCAGACCCGCAGTGGCCATTGGAACATCTATGGCAGTGAAGAAGACCTATGTGCTCGACCCTACTACG
Seq C2 exon
AGGTCTACACCATCCAGGGAAACTCCCACGGGAAGCCGTGTACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACGGGCCGGGAAGATGGGCACCTGTGGTGTGCCACCACCCAGGACTACGGCAAAGACGAGCGCTGGGGCTTCTGCCCCATCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCCCAGCACAGCGTTC
R:
CTCGTCTTTGCCGTAGTCCTG
Band lengths:
349-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]