DreEX0006047 @ danRer10
Exon Skipping
Gene
ENSDARG00000078135 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr3:19582126-19619264:+
Coord C1 exon
chr3:19582126-19582544
Coord A exon
chr3:19606967-19607389
Coord C2 exon
chr3:19619091-19619264
Length
423 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTCTCTTTTTTTCAGCAC
3' ss Score
10.55
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AGTCATTCAAACTTCTTTCTCCACCTTCCTCCACTTCACTTTCCTGGGACGTGTGTGTATGTATGTGTGTGTGTGAGAGAGAGAGTGTGTGTGTGTGAGCGAGCGTTGTGTGTGTGTGTTGGTGTGTGCAGTGAAAGTGAACGGTCTGCTCCGCTCATTCAGCGCGAGCTCATCACAGTCAACGCACACAGCGACACACGGACACCCTCAAAGAGCCCGTCTGTCCTCCAGCAGCCCAGCCTCTCCTTCACCGGGATAGGGGAAAACAGCCGCTTTTCCTCCCCACAACCTCCACCTTTCCGCGGGCATGCATCATCAGCACCGGGAGCGCCGCTGGAGTCGCGCGTGGATCAGCGTTTGCAGATGCACTTTATATTTATTTCTAGTTTTGAGCCTGGAGCGGAGCGCCGTGCACTCAG
Seq A exon
CACATACAGATGGATCAGACACATTTGCGTTTTTCCACGAGGGTGCACAGGGCTGTTTGGGGGTCCGAGACCACGTGCTTCACCTGTCGTCATCCTGTAAGGGTGAAGCCCAGCTATGGAAATGGGTGACCAGGAGTCGGCTCTTCAACATCGGCTCATCCCTCTGCCTGGGCATCACTGTGGGCAACGTCAGCACATTTGGTGACAGGTCACCGCTCGGTGTGTTTCGCTGCGACTACGAGCCTCCACGGGTGCGCTGGACCTGGAGCTGCAGCAAGTTCTTGGAGACGCTTGAAACGCACTTGGCCTCTCCTAAATTACTCCTCAACAGTGGTAATGTGTCAACAACTGCAAGACCACCATCCAAGAAGCTTCTCTGGAGAGTCTATGACAATCAAGACCTATGTGCCAAGTCATACCGAG
Seq C2 exon
AAATCTACACCATCCGAGGAAACTCTCACGCCAGCCCATGTTATTTCCCCTTCCTATACAACGGTCAGTGGTTCCACAGCTGCACCAGTGTGGGCAGAGAAGATGGTTTTCACTGGTGTGCCACGACCCACGATTATGGAAAGGACCAGCGCTGGGGCTTCTGCCCAATAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078135-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTGGTGTGTGCAGTGAA
R:
AATAACATGGGCTGGCGTGAG
Band lengths:
350-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]