HsaEX6024037 @ hg19
Exon Skipping
Gene
ENSG00000011028 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:16875]
Coordinates
chr17:60704762-60743628:+
Coord C1 exon
chr17:60704762-60705281
Coord A exon
chr17:60741909-60742310
Coord C2 exon
chr17:60743455-60743628
Length
402 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGCCTTCCCTTCCAGAAC
3' ss Score
11.76
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
CTGGGAAACAGAGCAGCAAGAGAAAGGGCGCACGCTGGGGTCCTCCTGGACCCGGCGTGTCCTCCTCTCCGCCACCCCTTTCTCTCCCTCCCGACGCTCTAGCCCCAGACCCGCGCCTCCTCCCCTTCCCCTCCCACGCTGCCCACTTCCCTTCCCCTCTACCCCTCGAACCCTCCTCCCCGGTTCTGCGCTCCTCCCTCCGCCCTCCCTCCGCCCGGGCTGCCTCCTCCCTCCTCCTCCCCGGGAGGCATCACTTCGTCCCGACCCGGAGGAGGACGCGAGCCCCTTGCGGGCGGTCATCACAGCCCAGCCTCGGGGCTGCCACAGCGCGTTGCGCCTGTGCGCCCTCGGTCCCCGCGTCCACTGAGCGCCGCGCTCGGGGATGGGGCCCGGCCGGCCGGCCCCCGCGCCCTGGCCTCGTCACCTGCTGCGCTGCGTCCTGCTCCTCGGGTGCCTGCACCTCGGCCGTCCCGGCGCCCCTGGGGACGCCGCCCTCCCGG
Seq A exon
AACCCAACGTCTTCCTCATCTTCAGCCATGGACTGCAGGGCTGCCTGGAGGCCCAGGGCGGGCAGGTCAGAGTCACCCCGGCTTGCAATACCAGCCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGAAACCGGCTATTCAACCTGGGTACCATGCAGTGCCTGGGCACAGGCTGGCCAGGCACCAACACCACGGCCTCCCTGGGCATGTATGAGTGTGACCGGGAAGCACTGAATCTTCGCTGGCATTGTCGTACACTGGGTGACCAGCTGTCCTTGCTCCTGGGGGCCCGCACCAGCAACATATCCAAGCCTGGCACCCTTGAGCGTGGTGACCAGACCCGCAGTGGCCAGTGGCGCATCTACGGCAGCGAGGAGGACCTATGTGCTCTGCCCTACCACG
Seq C2 exon
AGGTCTACACCATCCAGGGAAACTCCCACGGAAAGCCGTGCACCATCCCCTTCAAATATGACAACCAGTGGTTCCACGGCTGCACCAGCACGGGCCGCGAGGATGGTCACCTGTGGTGTGCCACCACCCAGGACTACGGCAAAGACGAGCGCTGGGGCTTCTGCCCCATCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011028-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCACAGCCCAGCCTC
R:
CTCGTCTTTGCCGTAGTCCTG
Band lengths:
354-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)