RnoEX0066601 @ rn6
Exon Skipping
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46597266-46621873:-
Coord C1 exon
chr3:46621626-46621873
Coord A exon
chr3:46601026-46601403
Coord C2 exon
chr3:46597266-46597439
Length
378 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCTTCTGTTACAGATA
3' ss Score
11.2
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGCGAGTTCATCTCTAGGGCTCCGGGGTAGCGTGGTCCTCGAGAAGAGTGGAGGCTTTTCTTGCCTCCTGCGCCCCAGTCCAGAGCACGGGATACGGTTGTGGTCCCGTGTGTGTCACCTAGCGTGCCTGATGGCACAATGGTTAGCGATGCTCCAGCTGCTCTGGCTCCAGCAGCTGCTGCTGGGGGTTCACCAGGGCAGCGCCCAAGATTTGACCCACACCCAGGAACTGGCCCTCGAGTGGCGTG
Seq A exon
ATAAAGGAATTTTCATTATCCAGAGCGAGAGCCTAAAGACTTGCATTCAGGCAGGTAAATCCGTACTGACCCTGGAGAACTGCACACAGCCAAACGAGTACATGCTGTGGAAATGGGTTTCCGACAACCACCTCTTTAATGTGGGAGCCAGCGGCTGCCTAGGCCTGAACATATCTGATCTGAAACGACCATTAAGTCTCTATGAATGTGATTCCACTCTCATTTCCTTGAGATGGCTCTGTGACAGGAAGACGATCGTGGGCCCACTCCAGTACAAGGTCCAGGTGAACCACAGCACGGTGGTGGCAAAGAAAACACCCCATAAGTGGAGCGCCTACATGCCCGGTGGTGGGGACATTTGTGAGCATCTTCACAGAG
Seq C2 exon
ATATATATACCTTAAAAGGGAATGCCCATGGGATGCCTTGTGTGTTTCCTTTCCAGTTCAAAGGTCAGTGGCACCACGAGTGCATCCGAGAAGGGCATAAAGAGCACCTGCTGTGGTGTGCCACCACGAGTCGCTACGAAGAGGATGAGAAATGGGGATTCTGCCCAGATCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129-'0-3,'0-2,1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(20.8=55.0)
A:
PF0065217=Ricin_B_lectin=PD(78.3=65.4)
C2:
PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCATCTCTAGGGCTCCGG
R:
GCAGGTGCTCTTTATGCCCTT
Band lengths:
355-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]