GgaEX6042629 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23416555-23423012:+
Coord C1 exon
chr7:23416555-23416678
Coord A exon
chr7:23420359-23420742
Coord C2 exon
chr7:23422845-23423012
Length
384 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTCCCTGTACAGATA
3' ss Score
10.89
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGTCGTGCCAAGCCGCGGCGATGCTGGGCGTGCTGCTCCTGGCGTGCTGCCTGCTTCTGGGCGGCCGCAGCCTGCCGCGGGGCGACGCCGCCCTCAGCCGGGACGAGCTGCCCTCCCTTCGGA
Seq A exon
ATAAAGGGATATTTATTATCCAAAGTTCGGGCTCCAACTTGTGCATCAAAGCGGACACAGCTGGCCTGGTTCTGGAAGACTGCAGTCAGCTCTCCAAACACATGCTATGGAAATGGGTATCCAATCGTCGTCTTTTCAACATAGGCAGAAGTAGCTGTCTAGGACTGAACATCAGTAGACCAGAACAGCCATTGACTATGCTTGAATGTGATTCAAATCGGTACTCATTATGGTGGAACTGTGATGGCAGAGCGCTGGTTGGTGTATCAGAGTACAGATTAGCTGTTGAAAACAGCAAACGTATTGTAGCAAAAAAGAAATCTGATTATCAGTGGATACAGTACATGTCCTACGATGAAGACCTTTGTGAACATCCTTTCCAAG
Seq C2 exon
AAACATACACCTTGCTGGGAAATTCCTTTGGTTTCCCATGTGTTTTTCCATTTAAGTATAACAACAAGTGGTATTATGAATGTACCAGAGATGGAAAGGAATTTGAGTGGTGTGCCACAACAAGTTACTATGAACAAGATGAAAAATGGGGCTTTTGTCCTGGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(0.1=0.0)
A:
PF0065217=Ricin_B_lectin=WD(100=88.4)
C2:
PF0004014=fn2=WD(100=70.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGCCTGCTTCTGG
R:
CACCAGGACAAAAGCCCCATT
Band lengths:
246-630
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]