BtaEX6009588 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36373939-36398075:+
Coord C1 exon
chr2:36373939-36374328
Coord A exon
chr2:36393643-36394026
Coord C2 exon
chr2:36397902-36398075
Length
384 bp
Sequences
Splice sites
3' ss Seq
CTTCTATTTTGCTGTTTCAGATA
3' ss Score
10.88
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CCACCCCCTGTTCCTCCTCCTGCTCCAAGCCGCAAAGGGAGAACCTCCGCGACTTTTCCGTCTTCCAGCCAGAGAGCCCCCCCACCGTGGCCACAGGGGTGACTGACGAAGTGGGTCTCGGGGACGCAGGGGTGGCGAGGCCCCCGGGGAGGGTTGGAGCGCGGAGGAGGCTGCGGTCCTGCCCTCCGCCACCCCACCCACCGCAGGGCTGGGCGCTGGGGCTTCGGCCCTGGCCCCCCGCGGGCGCTACACCCGGGGACCGGCGGGCCAAGTGGTTAGCGATGCCGCTGCTGTCGCTGTCGCTGCTCCTGCTGCTGCTGCAGGTACCGGCGGGCTCCGCCGAGACCGCGGCGTGGGCAGTCACCCCCGAGCGGCTCCGCGAGTGGCAAG
Seq A exon
ATAAAGGAATCTTCATTATCCAAAGTGAGAACCTCGAGAAATGTATTCAAGCCAGCAAATCTACACTGACCCTGGAGAACTGCAAACCACCCAACAAGTACATGCTGTGGAAGTGGGTTTCAAACCACCGCTTATTTAACATCGGAGGCAGTGGCTGCCTGGGCCTGAACGTGTCTAGTCCAGAGCAGCCACTGAGCATATACGAGTGTGATTCCACCCACGTTTCCTTGAAGTGGCACTGTAACAAGAAGACGATCACAGGCCCACTCCAGTACCTGGTCCAGGTGAAGCAGGACAACACGCTTGTGGCCTCAAGGAAATATCTCCATAAGTGGGTTTCCTATATGTCCGGCGGTGGAGGCATTTGTGACTATCTGCACAAAG
Seq C2 exon
ATTTGTACACAATCAAAGGGAATGCCCATGGGACTCCGTGCATGTTCCCCTTCCAGTACAATCAGCAGTGGCACCACGAATGTACCCGGGAAGGACGGGAAGACAACTTGCTGTGGTGTGCCACTACCAGCCGATACGAAAGAGACGAGAAGTGGGGATTTTGCCCAGATCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(7.6=18.9)
A:
PF0065217=Ricin_B_lectin=PD(91.3=65.1)
C2:
PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGTGGGTCTCGGGGAC
R:
TGCCACTGCTGATTGTACTGG
Band lengths:
357-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]