MmuEX1014379 @ mm10
Exon Skipping
Gene
ENSMUSG00000073421 | H2-Ab1
Description
histocompatibility 2, class II antigen A, beta 1 [Source:MGI Symbol;Acc:MGI:103070]
Coordinates
chr17:34267923-34269418:+
Coord C1 exon
chr17:34267923-34268033
Coord A exon
chr17:34268461-34268484
Coord C2 exon
chr17:34269095-34269418
Length
24 bp
Sequences
Splice sites
3' ss Seq
TATCTGACTTCTCTTTGCAGGAC
3' ss Score
11.48
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGGCACAGTCTGAGTCTGCCTGGAGCAAGATGTTGAGCGGCATCGGGGGCTGCGTGCTTGGGGTGATCTTCCTCGGGCTTGGCCTTTTCATCCGTCACAGGAGTCAGAAAG
Seq A exon
GACCTCGAGGCCCTCCTCCAGCAG
Seq C2 exon
GGCTCCTGCAGTGACTCAGAGTGTTTTGACTCAGTTGACTGTCTCAGACTGTAAGACCTGAATGTCTCTGCTCCGAATTCCTGACTGCCAGTCCACCTGCCACTCCGACTCAGAGTCTAGCATGGTACTATTGTATCCACCACCTCAGCTCTTGTGATCTGGAGTCCCCCAGTCTCTGTCTGTAGCTCTGCTCCTTGGTGATTCCAGAGACTCCATCTGTGTACAGCCGCACCCCAGGCTTTCTGTCTTCGATCTGTAGTAAACCAATGTATGCTTATCCCCACCTAGATTACAAATAAACGAGACTCAGACTCTGGTTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073421-'13-25,'13-24,15-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.778 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTTTTCATCCGTCACAG
R:
TCGGAGCAGAGACATTCAGGT
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types