RnoEX0073032 @ rn6
Exon Skipping
Gene
ENSRNOG00000032708 | RT1-Bb
Description
RT1 class II, locus Bb [Source:RGD Symbol;Acc:3469]
Coordinates
chr20:4047631-4049711:+
Coord C1 exon
chr20:4047631-4047741
Coord A exon
chr20:4048078-4048101
Coord C2 exon
chr20:4048699-4049711
Length
24 bp
Sequences
Splice sites
3' ss Seq
TATGTGACTTCCCTTTGCAGGAC
3' ss Score
12.1
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGGCACAGTCCGAGTCTGCCCAGAGCAAGATGCTGAGCGGCATCGGGGGCTTTGTGCTGGGGGTGATCTTCCTCGGGCTTGGCCTTTTCATCCGTCACAAGCGTCAGAAAG
Seq A exon
GACCTCGGGGGCCTCCTCCAGCAG
Seq C2 exon
GGCTCCTACAGTGACACAGGAGAGTGTTTTGGTTGTGTTTGAAGAGACATGGGAAACCTGCCCCCATCTTTCCGCATCAAATCCTGCAATTCTTCTGTCCCTACAGAGCCAGAGCAGTTAGCACCCCCCCCCCCCCCCGGGCAGACGCTGGCCTTGGGAACAGACAAAAGGCAGCCTTCTCCAACCTCAGCATCACGTCAGAACTCATACTCCCTCCCCTGGTTAGCAACCAGCATTTCTCTGGTGCAGATGGCTCCTGACCTTGAAGGAGGCGGGAGCCAATATCCTTGAAGTGATGAAAGCCCACTCTCGACTATGAGAAAGAGCCAATTAAGTGTCAAGTGTGCCCAGACAGCTGTGACCAGTTGTGAAATACCCTAGCTTCTGATAACGGAATGAGTTACTTCTTCCCAGGTCAGGAAGGTAGGTCCCTTTCCAGCACTCCCCACCCCATCTGAACAGGTTTGTCTCAGGGTTGGAAGGATGGCACTCCTTTACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032708-'15-18,'15-17,17-18
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.778 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGTCACAAGCGTCAGAA
R:
TTTGATGCGGAAAGATGGGGG
Band lengths:
104-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]