MmuEX1014383 @ mm10
Exon Skipping
Gene
ENSMUSG00000079547 | H2-DMb1
Description
histocompatibility 2, class II, locus Mb1 [Source:MGI Symbol;Acc:MGI:95922]
Coordinates
chr17:34150790-34157530:+
Coord C1 exon
chr17:34150790-34150825
Coord A exon
chr17:34155433-34155714
Coord C2 exon
chr17:34157246-34157530
Length
282 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGCCCCTTCCCCCAGGTG
3' ss Score
11.77
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
Exon sequences
Seq C1 exon
GCTACACTCCTCTCCCCGGATCCACCTACCCAGAAG
Seq A exon
GTGGCTTTGTGGCTCATGTGGAAAGCACGTGCGTGCTGGATGATGCTGGGACCCCACAGGACTTCACATACTGTGTTTCCTTCAACAAAGATCTGCTGGCCTGCTGGGATCCAGATGTGGGAAAAATAGTCCCCTGTGAATTTGGGGTGCTGTATCCATGGGCCGAAAATTTTTCAAGGATCCTCAACAAAGAAGAGAGCCTTCTCCAGCGTTTGCAAAACGGGCTTCTGGACTGTGCCTCCCACACCCAGCCCTTCTGGAATGCGCTGACCCACAGAACGA
Seq C2 exon
GAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCGGTGATGCTGGCCTGCTACGTCTGGGGCTTCTATCCAGCGGATGTGACCATCACATGGATGAAGAATGGGCAGCTTGTCCCTTCCCACAGCAACAAGGAGAAGACGGCTCAGCCCAATGGAGACTGGACATACCAGACAGTCTCCTACCTAGCCCTAACCCCTTCCTACGGGGACGTCTACACCTGCGTGGTTCAGCACAGCGGGACCTCTGAGCCCATCCGAGGGGACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079547-'1-4,'1-0,11-4
Average complexity
C1
Mappability confidence:
94%=91=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.146
Domain overlap (PFAM):
C1:
NA
A:
PF0096914=MHC_II_beta=WD(100=84.2)
C2:
PF0765410=C1-set=WD(100=87.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGATCCACCTACCCAGAAG
R:
CTCGGATGGGCTCAGAGGTC
Band lengths:
297-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types