MmuEX1014390 @ mm10
Exon Skipping
Gene
ENSMUSG00000067235 | H2-Q10
Description
histocompatibility 2, Q region locus 10 [Source:MGI Symbol;Acc:MGI:95929]
Coordinates
chr17:35473083-35473800:+
Coord C1 exon
chr17:35473083-35473358
Coord A exon
chr17:35473486-35473589
Coord C2 exon
chr17:35473768-35473800
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTGTACCTGTCCTTCCCAGAAC
3' ss Score
8.66
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATCCCCCAAAGACACATGTGACCCATCACCCAGGATCTGAAGGTGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAACTGGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGG
Seq A exon
AACCTCCTCCTTCCACTGACTCTATCATGTCACACATTGCTGATCTGCTGTGGCCATCATTAAAGCTCTGGTGGTATTTGTGATGAAGAGAAGGAGAAACACAG
Seq C2 exon
GTAGAAAAAGAGGGGACTATGCTCCCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067235-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=90.3)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGTGTTGGGCCCT
R:
CGGGAGCATAGTCCCCTCTTT
Band lengths:
251-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types