MmuEX1014677 @ mm10
Exon Skipping
Gene
ENSMUSG00000085347 | Hk1os
Description
hexokinase 1, opposite strand [Source:MGI Symbol;Acc:MGI:1917412]
Coordinates
chr10:62340256-62356359:+
Coord C1 exon
chr10:62340256-62340783
Coord A exon
chr10:62349487-62349630
Coord C2 exon
chr10:62356246-62356359
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATCAATGTTTCTGTTTTTAGCTG
3' ss Score
8.65
5' ss Seq
CCGGTAACA
5' ss Score
5.92
Exon sequences
Seq C1 exon
CCTCCTCAGTCCCCATTGGCTACAAGGCGCCACTGCCGCGCTATGGCTGGGGCTTCCCAGCCAGAGCAGGAGAATGACGGCCGCTCCCTCCCGCGCCGGAAAGGAGGCATCACCCTGCACGTTCCCCACGTAAGGAGCGCGCGGTCACGCGTGGTGGCACAGTGCCAAGCCAGAGTGGGTGGGGTGTGGGACACGATCTGGAGGGGACCAGAGGACAGATCCAGGACACCACAAACTGGAGAACGCGAACGGAGCCACACCCCTTCCTCGGAGATTAGGGCTCGTCCCCCACCCCTCCCATCCTCCCTGTTGGGGAAGCACACAAGTGGGCGTGGAAAGAGAGCGGAAGCCGAAACTAGGCGGCTTCACAGATCTTGCACTGGGTCCCTGTGCCTGCCTGCCATCGAGGATCCAAAATCTAAGGATGATGCTCGGAGTCCCACCACAGCCTGTCAGAGTTCACATAGCGAAACCCAAAGCGCCTGCCCCTGTGACATCAT
Seq A exon
CTGAATTCAGCCACCCTCACTACCGCCACCAGCCCAGGATAAGGATCATATTTCCAGTCTCCTTTGCAGCTACCCGGCCACTGGACCAATCTCCAACCAGGCAGATAAAGGGATGGAAGTTAGAGTCTCGCCTGGCGACTTCCG
Seq C2 exon
AAATTCAACCCACTGCTGGAGGAATTCACGGATACAGGAACCGTAAATGCAGAGACGAGCTGGGATTGCGTGTGCAGTGGGAACAGCCTCAGAATAGCTCATCATCTAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085347_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGGGGAAGCACACAAGT
R:
GCTCGTCTCTGCATTTACGGT
Band lengths:
254-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types