MmuEX1014678 @ mm10
Exon Skipping
Gene
ENSMUSG00000085347 | Hk1os
Description
hexokinase 1, opposite strand [Source:MGI Symbol;Acc:MGI:1917412]
Coordinates
chr10:62340256-62363367:+
Coord C1 exon
chr10:62340256-62340783
Coord A exon
chr10:62356246-62356359
Coord C2 exon
chr10:62363301-62363367
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATGTAATATTTTTTTCTTAGAAA
3' ss Score
6.21
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
CCTCCTCAGTCCCCATTGGCTACAAGGCGCCACTGCCGCGCTATGGCTGGGGCTTCCCAGCCAGAGCAGGAGAATGACGGCCGCTCCCTCCCGCGCCGGAAAGGAGGCATCACCCTGCACGTTCCCCACGTAAGGAGCGCGCGGTCACGCGTGGTGGCACAGTGCCAAGCCAGAGTGGGTGGGGTGTGGGACACGATCTGGAGGGGACCAGAGGACAGATCCAGGACACCACAAACTGGAGAACGCGAACGGAGCCACACCCCTTCCTCGGAGATTAGGGCTCGTCCCCCACCCCTCCCATCCTCCCTGTTGGGGAAGCACACAAGTGGGCGTGGAAAGAGAGCGGAAGCCGAAACTAGGCGGCTTCACAGATCTTGCACTGGGTCCCTGTGCCTGCCTGCCATCGAGGATCCAAAATCTAAGGATGATGCTCGGAGTCCCACCACAGCCTGTCAGAGTTCACATAGCGAAACCCAAAGCGCCTGCCCCTGTGACATCAT
Seq A exon
AAATTCAACCCACTGCTGGAGGAATTCACGGATACAGGAACCGTAAATGCAGAGACGAGCTGGGATTGCGTGTGCAGTGGGAACAGCCTCAGAATAGCTCATCATCTAACAGAG
Seq C2 exon
CGCTGCGTCAGTGCAGATACTGAGTGTTAATTGTCAAGTTGGAGGTACCCAGAAGCACCTGAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085347_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGGCGTGGAAAGAGAG
R:
ATCTCTCAGGTGCTTCTGGGT
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types