MmuEX1015399 @ mm10
Exon Skipping
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128940682-128941576:+
Coord C1 exon
chr10:128940682-128940937
Coord A exon
chr10:128941106-128941282
Coord C2 exon
chr10:128941445-128941576
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCCACTCCCATTATGCTAGCAC
3' ss Score
3.38
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACGTGTGCACACCGATATGAGTCTCGACAGAGAGTGGACCAGGCTTTGGAGACTCGGGATGTGATTGGCCGCTGCTTTGTGCTAAGCCAGGACCTGGCCATCCGTGATGAGCTGGATGGTGGGGAGTGGAAGTTCTGTGAGGGGCGCCCCCAGGGCCATGAACAGTTTGGGTTCTGTCAGCAGGGCACAGCTGCCACCTTCTCCCCTGACAGTCACTACCTCGTCTTTGGGGCTCCAGGAACCTATAACTGGAAGG
Seq A exon
CACGTAAATGAATGGGGGTACCTATTCTCCATCGCATGGCTATGTGTTTATCTACATGTTGGCATGAGCTCCCACATACACGCCTGGGCCAGGGCCTGCATGCTCCAACACAGCAGCCTACACCTCAACACTGCCATTTCCGTCTCTGCACGCTGCCACTGGCTGAGCTGACACTCG
Seq C2 exon
GCACGGCCAGGGTGGAGCTCTGTGCGCAGGGCTCGCCGGACCTGGCACACCTGGATGACGGGCCCTACGAGGCGGGGGGCGAGAAGGAGCAAGACCCCCGCCTCATCCCGGTCCCTGCCAACAGCTACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348-'11-9,'11-8,13-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000218290fB11638
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGTGATGAGCTGGATGG
R:
GGGGGTCTTGCTCCTTCTCG
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types