RnoEX0045050 @ rn6
Exon Skipping
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3362382-3363278:+
Coord C1 exon
chr7:3362382-3362637
Coord A exon
chr7:3362808-3362984
Coord C2 exon
chr7:3363147-3363278
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCCACTCCCATTATGCTAGCAC
3' ss Score
3.38
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACCTGTGCACACCGATATGAGTCTCGACAGAGAGTGGACCAGGTTTTGGAGACTCGGGATGTGATTGGTCGTTGCTTTGTGCTGAGCCAGGACCTGGCCATCCGTGATGAGTTGGATGGTGGGGAGTGGAAGTTCTGTGAAGGGCGCCCCCAGGGCCACGAACAATTTGGGTTCTGCCAGCAGGGCACAGCTGCCACCTTCTCCCCCGACAGCCACTACCTCATTTTTGGGGCTCCAGGAACCTATAACTGGAAGG
Seq A exon
CACATAAATGAATGGGGTTACCCACTCTCCATCGCATGGCCATGTGTTTATCTACACGTTGGCATGAGCTCCCACACGCACGGCTGGGCCAGGGCCTGCATGCTCCAACACAGCTGCCCACACCTCATCATTGCCATTCCCGTCTCTGCACGCTGCCACTGGCTAAGCTGACACTCG
Seq C2 exon
GCACAGCCAGGGTGGAGCTCTGTGCGCAGGGCTCGTCGGACCTGGCACACCTGGATGATGGGCCCTACGAGGCGGGGGGCGAGAAGGACCAAGACCCCCGCCTCATTCCGGTCCCTGCCAACAGCTACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905-'10-8,'10-7,11-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000030453fB7053
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCGTTGCTTTGTGCTGA
R:
ATCATCCAGGTGTGCCAGGTC
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]