RnoINT0076091 @ rn6
Intron Retention
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3362382-3363278:+
Coord C1 exon
chr7:3362382-3362637
Coord A exon
chr7:3362638-3363146
Coord C2 exon
chr7:3363147-3363278
Length
509 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TAACAGGACTGTCCTTGCAGGCA
3' ss Score
5.2
Exon sequences
Seq C1 exon
ACCTGTGCACACCGATATGAGTCTCGACAGAGAGTGGACCAGGTTTTGGAGACTCGGGATGTGATTGGTCGTTGCTTTGTGCTGAGCCAGGACCTGGCCATCCGTGATGAGTTGGATGGTGGGGAGTGGAAGTTCTGTGAAGGGCGCCCCCAGGGCCACGAACAATTTGGGTTCTGCCAGCAGGGCACAGCTGCCACCTTCTCCCCCGACAGCCACTACCTCATTTTTGGGGCTCCAGGAACCTATAACTGGAAGG
Seq A exon
GTGAGTCACTCGCTAGGGAGGGTGGAGAAGGAGACCAAAACCTCCTCTTACCTCAGAGATGGGATCCCATCTCTTGGGATGCCACCCATTGCTGGCAGCAACAGGCCAAGCATGACCACGAGTTGACCTGGGGCATTGCCTGCCATGCCCTTCCACTCCCATTATGCTAGCACATAAATGAATGGGGTTACCCACTCTCCATCGCATGGCCATGTGTTTATCTACACGTTGGCATGAGCTCCCACACGCACGGCTGGGCCAGGGCCTGCATGCTCCAACACAGCTGCCCACACCTCATCATTGCCATTCCCGTCTCTGCACGCTGCCACTGGCTAAGCTGACACTCGGTGAGTGTGATGTTTGGGGGGACCCCTAGAAGCTTGGGCTAGGGAGATGGTGGAGGTGGGGCTGAAGGGGAGGAGCTGCCCGTGTGCCTGTCCAGCCGCATGTCTGGCCTGAGGGGGCGTACCTCTCGCCTACCTTGAATACTAACAGGACTGTCCTTGCAG
Seq C2 exon
GCACAGCCAGGGTGGAGCTCTGTGCGCAGGGCTCGTCGGACCTGGCACACCTGGATGATGGGCCCTACGAGGCGGGGGGCGAGAAGGACCAAGACCCCCGCCTCATTCCGGTCCCTGCCAACAGCTACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905:ENSRNOT00000030453:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTGGAGACTCGGGATGT
R:
CAAGGTAGCTGTTGGCAGGG
Band lengths:
347-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]