HsaINT0082542 @ hg38
Intron Retention
Gene
ENSG00000135424 | ITGA7
Description
integrin subunit alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr12:55699870-55701154:-
Coord C1 exon
chr12:55700899-55701154
Coord A exon
chr12:55699990-55700898
Coord C2 exon
chr12:55699870-55699989
Length
909 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCTCACCCCACCCCCCACAGGGT
3' ss Score
9.32
Exon sequences
Seq C1 exon
ACCTGTGCACACCGATATGAGGCAAGGCAGCGAGTGGACCAGATCCTGGAGACGCGGGATATGATTGGTCGCTGCTTTGTGCTCAGCCAGGACCTGGCCATCCGGGATGAGTTGGATGGTGGGGAATGGAAGTTCTGTGAGGGACGCCCCCAAGGCCATGAACAATTTGGGTTCTGCCAGCAGGGCACAGCTGCCGCCTTCTCCCCTGATAGCCACTACCTCCTCTTTGGGGCCCCAGGAACCTATAATTGGAAGG
Seq A exon
GTGAGTCACTCCTCGGGAAGGGGAGAAGGGGACCAAAACCTCCTCTTACCTCAGAGACAGGGTTGGGGATGGCACATGGCCAAGCATGACCACATGTGCACTGCTGTATGGCCCCAGGGCACTGCCATGCCTTCCACCCCATTGAGCTAGTGCACACATGAATGGGGGGTGCCTCCTTTCCCTCGCACGGCCAAGTGTTCCTCAACATGCTGGCATGGGCCCCAAGTGCACGCTGGGCCTGCAGCTGGGGCCTGCATGCTCCAACACACTAGCCCACACCTCATCACTGCCATTCCCGTCTCCGCACGCTGCTGCTGGCTGAGCTGACACTCGGTGAGTGTGATGCCACATCTGGGGGACCCCAGGAAGCCTGGGTTGGGGACAGGGTGGGGAGAGGGCTAGAAAGAAGAGGCAGGGCTTCCCCGTGTGCCTGTCTAACTCAGTGTCCGGCCTGAGGGGTGTTCCTTGCGCCCTGCCCTGGGCACTAACAGGTCTGTCCTTGCAGGCACGGCCAGGGTGGAGCTCTGTGCACAGGGCTCAGCGGACCTGGCACACCTGGACGACGGTCCCTACGAGGCGGGGGGAGAGAAGGAGCAGGACCCCCGCCTCATCCCGGTCCCTGCCAACAGCTACTTTGGTAGGGACCTCTCCCCGGCCCAGAACTGCTCTAACCCTCTGCTCCTCTCTCTTGTCCTCTCTCTCCATGCTCCCATCCTTCTGTCTCTGTTTCTGTCTCTCACCTTGTCTCTCTCTGTCTTTCTGTCTCTGGCTGTGATCTCTCTGGTCTCTTTTTCTCTCTCCACCTCTTCTTCTTCCACCATTTTCTGGCCTTTCTGTGGCTCTGTCTCCCTACTCTGTGGCCCCTACTCTGGATGTCCCCTCCCTGGTGTCTCACCCCACCCCCCACAG
Seq C2 exon
GGTTGCTTTTTGTGACCAACATTGATAGCTCAGACCCCGACCAGCTGGTGTATAAAACTTTGGACCCTGCTGACCGGCTCCCAGGACCAGCCGGAGACTTGGCCCTCAATAGCTACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135424:ENST00000257879:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGATATGAGGCAAGGCAG
R:
TATTGAGGGCCAAGTCTCCGG
Band lengths:
358-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development